Overview | Citing AnVILWorkflow | Install and load package | Google Cloud SDK | Create Terra account | Major steps | Example in this vignette: bulk RNAseq analysis | Browse AnVIL resources | Setup | Clone workspace | Curated by this package | Any workspace you have access to | Prepare input | Current input | Update input | Run workflow | Monitor progress | Abort submission | Result | Session Info

Overview | Background | Install and load pacakge | Citing lefser | Analysis example | Prepare input | Terminal node | Relative abundance | Run lefser | Visualization using lefserPlot | Benchmarking against other tools | Interoperating with phyloseq | Session Info

Citing GenomicSuperSignature | Setup | Install and load package | Download RAVmodel | Content of RAVmodel | RAVindex | Metadata for RAVmodel | Studies in each RAV | Silhouette width for each RAV | GSEA on each RAV | MeSH terms for each study | PCA summary for each study | Other relevant code | Session Info

Setup | Install and load package | Download RAVmodel | Example dataset | Which RAV best represents the dataset? | HeatmapTable | Interactive Graph | What kinds of information can you access through RAV? | MeSH terms in wordcloud | GSEA | Associated gene sets of validated RAV | Search enriched pathways through keyword | Related prior studies | Session Info